Index
_
|
A
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
R
|
S
|
T
|
U
|
V
|
W
_
__array_ufunc__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__enter__() (pyranges.multithreaded.suppress_stdout_stderr method)
__exit__() (pyranges.multithreaded.suppress_stdout_stderr method)
__getattr__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__getitem__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__getstate__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__iter__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__len__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__repr__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__setattr__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__setstate__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__str__() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
__version__ (in module pyranges.version)
_fetch_gene_transcript_exon_id() (in module pyranges.readers)
_lengths() (in module pyranges.multithreaded)
_repr_html_() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
_slack() (in module pyranges.multithreaded)
_tes() (in module pyranges.multithreaded)
_tss() (in module pyranges.multithreaded)
A
aorta() (in module pyranges.data)
aorta2() (in module pyranges.data)
apply() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
apply_chunks() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
apply_pair() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
as_df() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
assign() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
C
call_f() (in module pyranges.multithreaded)
call_f_single() (in module pyranges.multithreaded)
chipseq() (in module pyranges.data)
chipseq_background() (in module pyranges.data)
chromosomes() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
chromsizes() (in module pyranges.data)
cluster() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
columns() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
control_bam() (in module pyranges.data)
copy() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
count_overlaps() (in module pyranges)
(in module pyranges.multioverlap)
(pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
coverage() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
cpg() (in module pyranges.data)
D
df() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
dfs (pyranges.PyRanges attribute)
(pyranges.pyranges.PyRanges attribute)
drop() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
drop_duplicate_positions() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
dtypes() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
E
empty() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
ensembl_gtf() (in module pyranges.data)
exons() (in module pyranges.data)
F
f1() (in module pyranges.data)
f2() (in module pyranges.data)
fdr() (in module pyranges.statistics)
features (pyranges.PyRanges attribute)
(pyranges.pyranges.PyRanges attribute)
fisher_exact() (in module pyranges.statistics)
five_end() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
forbes() (pyranges.statistics.StatisticsMethods method)
from_dict() (in module pyranges)
from_string() (in module pyranges)
G
gencode_gtf() (in module pyranges.data)
genome_bounds() (in module pyranges.genomicfeatures)
GenomicFeaturesMethods (class in pyranges.genomicfeatures)
get_chromosomes_from_dict() (in module pyranges.helpers)
get_fasta() (in module pyranges.get_fasta)
get_key_from_df() (in module pyranges.helpers)
get_multithreaded_funcs() (in module pyranges.multithreaded)
get_n_args() (in module pyranges.multithreaded)
get_strands_from_dict() (in module pyranges.helpers)
H
head() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
I
insert() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
intersect() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
introns() (pyranges.genomicfeatures.GenomicFeaturesMethods method)
items() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
itergrs() (in module pyranges)
J
jaccard() (pyranges.statistics.StatisticsMethods method)
join() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
K
k_nearest() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
keys() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
L
length() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
lengths() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
M
make_binary_sparse() (in module pyranges.multithreaded)
make_sparse() (in module pyranges.multithreaded)
make_unary_sparse() (in module pyranges.multithreaded)
max_disjoint() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
mcc() (in module pyranges.statistics)
merge() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
merge_dfs() (in module pyranges.multithreaded)
module
pyranges
pyranges.data
pyranges.genomicfeatures
pyranges.get_fasta
pyranges.helpers
pyranges.multioverlap
pyranges.multithreaded
pyranges.pyranges
pyranges.readers
pyranges.statistics
pyranges.stats
pyranges.version
mp() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
mpc() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
msp() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
mspc() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
N
nearest() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
new_position() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
O
overlap() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
P
pc() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
pr (pyranges.genomicfeatures.GenomicFeaturesMethods attribute)
(pyranges.statistics.StatisticsMethods attribute)
print() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
process_results() (in module pyranges.multithreaded)
pyrange_apply() (in module pyranges.multithreaded)
pyrange_apply_chunks() (in module pyranges.multithreaded)
pyrange_apply_single() (in module pyranges.multithreaded)
pyranges
module
PyRanges (class in pyranges)
(class in pyranges.pyranges)
pyranges.data
module
pyranges.genomicfeatures
module
pyranges.get_fasta
module
pyranges.helpers
module
pyranges.multioverlap
module
pyranges.multithreaded
module
pyranges.pyranges
module
pyranges.readers
module
pyranges.statistics
module
pyranges.stats
module
pyranges.version
module
R
random() (in module pyranges)
ray_initialized() (in module pyranges.multithreaded)
read_bam() (in module pyranges)
(in module pyranges.readers)
read_bed() (in module pyranges)
(in module pyranges.readers)
read_bigwig() (in module pyranges.readers)
read_gff3() (in module pyranges)
(in module pyranges.readers)
read_gtf() (in module pyranges)
(in module pyranges.readers)
read_gtf_full() (in module pyranges.readers)
read_gtf_restricted() (in module pyranges.readers)
relative_distance() (pyranges.statistics.StatisticsMethods method)
rowbased_pearson() (in module pyranges.statistics)
rowbased_rankdata() (in module pyranges.statistics)
rowbased_spearman() (in module pyranges.statistics)
rp() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
rpc() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
S
sample() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
set_intersect() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
set_union() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
simes() (in module pyranges.statistics)
single_value_key() (in module pyranges.helpers)
skiprows() (in module pyranges.readers)
slack() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
sort() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
sp() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
spc() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
split() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
StatisticsMethods (class in pyranges.statistics)
stats (pyranges.PyRanges attribute)
(pyranges.pyranges.PyRanges attribute)
stranded() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
strands() (pyranges.PyRanges property)
(pyranges.pyranges.PyRanges property)
subset() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
subtract() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
summary() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
suppress_stdout_stderr (class in pyranges.multithreaded)
T
tail() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
tes() (pyranges.genomicfeatures.GenomicFeaturesMethods method)
three_end() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
tile() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
tile_genome() (in module pyranges.genomicfeatures)
to_bed() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_bigwig() (in module pyranges)
(pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_csv() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_example() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_gff3() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_gtf() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_rle() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
to_rows() (in module pyranges.readers)
to_rows_gff3() (in module pyranges.readers)
to_rows_keep_duplicates() (in module pyranges.readers)
tss() (pyranges.genomicfeatures.GenomicFeaturesMethods method)
U
ucsc_bed() (in module pyranges.data)
unstrand() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
V
values() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
version_info() (in module pyranges)
W
window() (pyranges.PyRanges method)
(pyranges.pyranges.PyRanges method)
pyranges
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