pyranges1
Contents:
Installation
Tutorial
How-to pages
API reference
Cheatsheet
Command-line interface: pyranger
Developer guide
Migration guide from v0 to v1
pyranges1
Index
Index
A
|
B
|
C
|
D
|
E
|
F
|
G
|
H
|
I
|
J
|
K
|
L
|
M
|
N
|
O
|
P
|
Q
|
R
|
S
|
T
|
U
|
V
|
W
A
add() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
agg() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
aggregate() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
ALIGNED (pyranges1.ext.stats.ndarray attribute)
all() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
Any (class in pyranges1.ext.orfs)
(class in pyranges1.ext.stats)
any() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
apply() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
applymap() (pyranges1.ext.stats.DataFrame method)
arg_to_list() (in module pyranges1.ext.orfs)
argmax() (pyranges1.ext.stats.ndarray method)
argmin() (pyranges1.ext.stats.ndarray method)
argpartition() (pyranges1.ext.stats.ndarray method)
argsort() (pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
array (pyranges1.ext.stats.Series property)
assign() (pyranges1.ext.stats.DataFrame method)
astype() (pyranges1.ext.stats.ndarray method)
autocorr() (pyranges1.ext.stats.Series method)
axes (pyranges1.ext.stats.DataFrame property)
(pyranges1.ext.stats.Series property)
B
base (pyranges1.ext.stats.ndarray attribute)
,
[1]
BEHAVED (pyranges1.ext.stats.ndarray attribute)
between() (pyranges1.ext.stats.Series method)
boxplot() (pyranges1.ext.stats.DataFrame method)
byteswap() (pyranges1.ext.stats.ndarray method)
C
C_CONTIGUOUS (pyranges1.ext.stats.ndarray attribute)
calculate_frame() (in module pyranges1.ext.orfs)
CARRAY (pyranges1.ext.stats.ndarray attribute)
case_when() (pyranges1.ext.stats.Series method)
cat (pyranges1.ext.stats.Series attribute)
choose() (pyranges1.ext.stats.ndarray method)
chromosomes (pyranges1.core.pyranges_main.PyRanges property)
chromosomes_and_strands (pyranges1.core.pyranges_main.PyRanges property)
clear_kmer_memory() (in module pyranges1.ext.seqs)
clip() (pyranges1.ext.stats.ndarray method)
clip_ranges() (pyranges1.core.pyranges_main.PyRanges method)
cluster_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
columns (pyranges1.ext.stats.DataFrame attribute)
combinations_with_replacement (class in pyranges1.ext.stats)
combine() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
combine_first() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
combine_interval_columns() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
compare() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
complement_ranges() (pyranges1.core.pyranges_main.PyRanges method)
compress() (pyranges1.ext.stats.ndarray method)
compute_interval_metrics() (pyranges1.core.pyranges_main.PyRanges method)
concat() (in module pyranges1)
conj() (pyranges1.ext.stats.ndarray method)
conjugate() (pyranges1.ext.stats.ndarray method)
copy() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.ext.stats.defaultdict method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.range_frame.range_frame.RangeFrame method)
corr() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
corrwith() (pyranges1.ext.stats.DataFrame method)
count() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
count_overlaps() (in module pyranges1)
(pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
cov() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
ctypes (pyranges1.ext.stats.ndarray attribute)
,
[1]
cummax() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
cummin() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
cumprod() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
cumsum() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
D
data (pyranges1.ext.stats.ndarray attribute)
,
[1]
DataFrame (class in pyranges1.ext.stats)
default_factory (pyranges1.ext.stats.defaultdict attribute)
defaultdict (class in pyranges1.ext.stats)
diagonal() (pyranges1.ext.stats.ndarray method)
diff() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
display_options() (pyranges1.core.options.PyRangesOptions method)
div() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
divide() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
divmod() (pyranges1.ext.stats.Series method)
dot() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
downstream() (pyranges1.core.pyranges_main.PyRanges method)
drop() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
(pyranges1.range_frame.range_frame.RangeFrame method)
drop_duplicates() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
dropna() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
dt (pyranges1.ext.stats.Series attribute)
dtype (pyranges1.ext.stats.ndarray attribute)
,
[1]
(pyranges1.ext.stats.Series property)
dtypes (pyranges1.ext.stats.Series property)
dump() (pyranges1.ext.stats.ndarray method)
dumps() (pyranges1.ext.stats.ndarray method)
duplicated() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
E
ensure_pyranges() (in module pyranges1.ext.orfs)
(in module pyranges1.ext.stats)
eq() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
eval() (pyranges1.ext.stats.DataFrame method)
explode() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
extend_orfs() (in module pyranges1.ext.orfs)
extend_ranges() (pyranges1.core.pyranges_main.PyRanges method)
F
F_CONTIGUOUS (pyranges1.ext.stats.ndarray attribute)
FARRAY (pyranges1.ext.stats.ndarray attribute)
fdr() (in module pyranges1.ext.stats)
fill() (pyranges1.ext.stats.ndarray method)
fisher_exact() (in module pyranges1.ext.stats)
five_end() (pyranges1.core.pyranges_main.PyRanges method)
flags (pyranges1.ext.stats.ndarray attribute)
,
[1]
flat (pyranges1.ext.stats.ndarray attribute)
,
[1]
flatten() (pyranges1.ext.stats.ndarray method)
flip_strand() (pyranges1.core.pyranges_main.PyRanges method)
floordiv() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
FNC (pyranges1.ext.stats.ndarray attribute)
forbes() (in module pyranges1.ext.stats)
FORC (pyranges1.ext.stats.ndarray attribute)
from_dict() (pyranges1.ext.stats.DataFrame class method)
from_records() (pyranges1.ext.stats.DataFrame class method)
from_string() (in module pyranges1)
G
ge() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
get_option() (pyranges1.core.options.PyRangesOptions method)
get_sequence() (pyranges1.core.pyranges_main.PyRanges method)
get_with_loc_columns() (pyranges1.core.pyranges_main.PyRanges method)
getfield() (pyranges1.ext.stats.ndarray method)
group_cumsum() (pyranges1.core.pyranges_main.PyRanges method)
groupby() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
gt() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
H
has_strand (pyranges1.core.pyranges_main.PyRanges property)
hasnans (pyranges1.ext.stats.Series property)
hist() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
I
idxmax() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
idxmin() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
imag (pyranges1.ext.stats.ndarray attribute)
,
[1]
index (pyranges1.ext.stats.DataFrame attribute)
(pyranges1.ext.stats.Series attribute)
info() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
insert() (pyranges1.ext.stats.DataFrame method)
intersect_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
isetitem() (pyranges1.ext.stats.DataFrame method)
isin() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
isna() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
isnull() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
item() (pyranges1.ext.stats.ndarray method)
items() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
itemset() (pyranges1.ext.stats.ndarray method)
itemsize (pyranges1.ext.stats.ndarray attribute)
,
[1]
iterrows() (pyranges1.ext.stats.DataFrame method)
itertuples() (pyranges1.ext.stats.DataFrame method)
J
jaccard() (in module pyranges1.ext.stats)
join() (pyranges1.ext.stats.DataFrame method)
join_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
K
keys() (pyranges1.ext.stats.Series method)
kurt() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
kurtosis() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
L
le() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
length (pyranges1.core.pyranges_main.PyRanges property)
lengths() (pyranges1.core.pyranges_main.PyRanges method)
list (pyranges1.ext.stats.Series attribute)
loc_columns (pyranges1.core.pyranges_main.PyRanges property)
loci (pyranges1.core.pyranges_main.PyRanges property)
lt() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
M
make_strand_valid() (pyranges1.core.pyranges_main.PyRanges method)
map() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
map_to_global() (pyranges1.core.pyranges_main.PyRanges method)
map_to_local() (pyranges1.core.pyranges_main.PyRanges method)
max() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
max_disjoint_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
mcc() (in module pyranges1.ext.stats)
mean() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
median() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
melt() (pyranges1.ext.stats.DataFrame method)
memory_usage() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
merge() (pyranges1.ext.stats.DataFrame method)
merge_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
min() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
mod() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
mode() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
module
pyranges1
pyranges1.ext.orfs
pyranges1.ext.seqs
pyranges1.ext.stats
mul() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
multiply() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
N
name (pyranges1.ext.stats.Series property)
nbytes (pyranges1.ext.stats.ndarray attribute)
,
[1]
ndarray (class in pyranges1.ext.stats)
ndim (pyranges1.ext.stats.ndarray attribute)
,
[1]
ne() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
nearest_ranges() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
newbyteorder() (pyranges1.ext.stats.ndarray method)
nlargest() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
nonzero() (pyranges1.ext.stats.ndarray method)
notna() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
notnull() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
nsmallest() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
nunique() (pyranges1.ext.stats.DataFrame method)
O
outer_ranges() (pyranges1.core.pyranges_main.PyRanges method)
overlap() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
OWNDATA (pyranges1.ext.stats.ndarray attribute)
P
partition() (pyranges1.ext.stats.ndarray method)
pivot() (pyranges1.ext.stats.DataFrame method)
pivot_table() (pyranges1.ext.stats.DataFrame method)
plot (pyranges1.ext.stats.DataFrame attribute)
(pyranges1.ext.stats.Series attribute)
pop() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
pow() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
prod() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
product() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
ptp() (pyranges1.ext.stats.ndarray method)
put() (pyranges1.ext.stats.ndarray method)
PyRanges (class in pyranges1.core.pyranges_main)
pyranges1
module
pyranges1.ext.orfs
module
pyranges1.ext.seqs
module
pyranges1.ext.stats
module
PyRangesOptions (class in pyranges1.core.options)
Q
quantile() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
query() (pyranges1.ext.stats.DataFrame method)
R
radd() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
random() (in module pyranges1)
RangeFrame (class in pyranges1.range_frame.range_frame)
ravel() (pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
rdiv() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rdivmod() (pyranges1.ext.stats.Series method)
read_bam() (in module pyranges1)
read_bed() (in module pyranges1)
read_bigwig() (in module pyranges1)
read_gff() (in module pyranges1)
read_gff3() (in module pyranges1)
read_gtf() (in module pyranges1)
real (pyranges1.ext.stats.ndarray attribute)
,
[1]
reindex() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
(pyranges1.range_frame.range_frame.RangeFrame method)
relative_distance() (in module pyranges1.ext.stats)
remove_nonloc_columns() (pyranges1.core.pyranges_main.PyRanges method)
remove_strand() (pyranges1.core.pyranges_main.PyRanges method)
rename() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rename_axis() (pyranges1.ext.stats.Series method)
reorder_levels() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
repeat() (pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
reset_index() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
reset_options() (pyranges1.core.options.PyRangesOptions method)
reshape() (pyranges1.ext.stats.ndarray method)
resize() (pyranges1.ext.stats.ndarray method)
reverse_complement() (in module pyranges1.ext.seqs)
rfloordiv() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rmod() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rmul() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
round() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
rowbased_pearson() (in module pyranges1.ext.stats)
rowbased_rankdata() (in module pyranges1.ext.stats)
rowbased_spearman() (in module pyranges1.ext.stats)
rpow() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rsub() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
rtruediv() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
S
searchsorted() (pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
select_dtypes() (pyranges1.ext.stats.DataFrame method)
sem() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
Series (class in pyranges1.ext.stats)
set_axis() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
set_index() (pyranges1.ext.stats.DataFrame method)
set_intersect_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
set_option() (pyranges1.core.options.PyRangesOptions method)
set_union_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
setfield() (pyranges1.ext.stats.ndarray method)
setflags() (pyranges1.ext.stats.ndarray method)
shape (pyranges1.ext.stats.DataFrame property)
(pyranges1.ext.stats.ndarray attribute)
,
[1]
shift() (pyranges1.ext.stats.DataFrame method)
simes() (in module pyranges1.ext.stats)
size (pyranges1.ext.stats.ndarray attribute)
,
[1]
skew() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
slice_ranges() (pyranges1.core.pyranges_main.PyRanges method)
sort() (pyranges1.ext.stats.ndarray method)
sort_by_position() (pyranges1.range_frame.range_frame.RangeFrame method)
sort_index() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
sort_ranges() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
sort_values() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
sparse (pyranges1.ext.stats.DataFrame attribute)
(pyranges1.ext.stats.Series attribute)
split_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
sqrt() (in module pyranges1.ext.stats)
squeeze() (pyranges1.ext.stats.ndarray method)
stack() (pyranges1.ext.stats.DataFrame method)
std() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
str (pyranges1.ext.stats.Series attribute)
strand_behavior_from_validated_use_strand() (in module pyranges1.ext.stats)
strand_valid (pyranges1.core.pyranges_main.PyRanges property)
strides (pyranges1.ext.stats.ndarray attribute)
,
[1]
struct (pyranges1.ext.stats.Series attribute)
style (pyranges1.ext.stats.DataFrame property)
sub() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
subtract() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
subtract_overlaps() (pyranges1.core.pyranges_main.PyRanges method)
(pyranges1.range_frame.range_frame.RangeFrame method)
sum() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
summary() (pyranges1.core.pyranges_main.PyRanges method)
swapaxes() (pyranges1.ext.stats.ndarray method)
swaplevel() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
T
T (pyranges1.ext.stats.DataFrame property)
(pyranges1.ext.stats.ndarray attribute)
,
[1]
take() (pyranges1.ext.stats.ndarray method)
three_end() (pyranges1.core.pyranges_main.PyRanges method)
tile_genome() (in module pyranges1)
tile_ranges() (pyranges1.core.pyranges_main.PyRanges method)
to_bed() (pyranges1.core.pyranges_main.PyRanges method)
to_bigwig() (pyranges1.core.pyranges_main.PyRanges method)
to_dict() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
to_feather() (pyranges1.ext.stats.DataFrame method)
to_frame() (pyranges1.ext.stats.Series method)
to_gbq() (pyranges1.ext.stats.DataFrame method)
to_gff3() (pyranges1.core.pyranges_main.PyRanges method)
to_gtf() (pyranges1.core.pyranges_main.PyRanges method)
to_html() (pyranges1.ext.stats.DataFrame method)
to_markdown() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
to_numpy() (pyranges1.ext.stats.DataFrame method)
to_orc() (pyranges1.ext.stats.DataFrame method)
to_parquet() (pyranges1.ext.stats.DataFrame method)
to_period() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
to_records() (pyranges1.ext.stats.DataFrame method)
to_rle() (pyranges1.core.pyranges_main.PyRanges method)
to_stata() (pyranges1.ext.stats.DataFrame method)
to_string() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
to_timestamp() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
to_xml() (pyranges1.ext.stats.DataFrame method)
tobytes() (pyranges1.ext.stats.ndarray method)
tofile() (pyranges1.ext.stats.ndarray method)
tolist() (pyranges1.ext.stats.ndarray method)
tostring() (pyranges1.ext.stats.ndarray method)
trace() (pyranges1.ext.stats.ndarray method)
transform() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
translate() (in module pyranges1.ext.seqs)
transpose() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
truediv() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
U
unique() (pyranges1.ext.stats.Series method)
unstack() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
update() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.Series method)
upstream() (pyranges1.core.pyranges_main.PyRanges method)
use_strand_from_validated_strand_behavior() (in module pyranges1.ext.stats)
V
validate_and_convert_strand_behavior() (in module pyranges1.ext.stats)
value_counts() (pyranges1.ext.stats.DataFrame method)
values (pyranges1.ext.stats.DataFrame property)
(pyranges1.ext.stats.Series property)
var() (pyranges1.ext.stats.DataFrame method)
(pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
view() (pyranges1.ext.stats.ndarray method)
(pyranges1.ext.stats.Series method)
W
window_ranges() (pyranges1.core.pyranges_main.PyRanges method)
WRITEABLE (pyranges1.ext.stats.ndarray attribute)
WRITEBACKIFCOPY (pyranges1.ext.stats.ndarray attribute)