Extensions submodules

Pyranges includes extensions modules that provide additional domain-specific functionalities.

• Orfs: Open Reading Frames
  • Any
  • arg_to_list()
  • calculate_frame()
  • ensure_pyranges()
  • extend_orfs()
• Seqs: sequences
  • clear_kmer_memory()
  • reverse_complement()
  • translate()
• Stats: statistics
  • Any
  • DataFrame
  • Series
  • combinations_with_replacement
  • defaultdict
  • ensure_pyranges()
  • fdr()
  • fisher_exact()
  • forbes()
  • jaccard()
  • mcc()
  • ndarray
  • relative_distance()
  • rowbased_pearson()
  • rowbased_rankdata()
  • rowbased_spearman()
  • simes()
  • sqrt()
  • strand_behavior_from_validated_use_strand()
  • use_strand_from_validated_strand_behavior()
  • validate_and_convert_strand_behavior()