The PyRanges documentation
PyRanges is a Python library specifically designed for efficient and intuitive manipulation of genomics data, particularly genomic intervals (like genes, genomic features, or reads). The library is optimized for fast querying and manipulation of genomic annotations.
PyRanges is open source, and hosted at github: https://github.com/pyranges/pyranges
Stovner EB, Sætrom P (2020) PyRanges: efficient comparison of genomic intervals in Python. Bioinformatics 36(3):918-919 http://dx.doi.org/10.1093/bioinformatics/btz615
🚀 The tutorial, recommended for all new users
🚀 The how-to pages, further below, where functionalities are grouped by topic
🚀 The API reference, where all methods are explained in detail.
🚀 The developer guide, to follow in order to contribute to PyRanges.